Publications 151-200 | Lebrilla League

Publications: 151-200 • 101-150 • 51-100 • 1-50 • Book Chapters • Patents

Publications 151-200

192. Loss of mucin oligosaccharides in the stomach of the rhesus macaque after infection with Helicobacter pylori. Cooke, L.C., An, H.J., Kim, J., Lebrilla, C.B., Solnick, J.V., Gastroenterology, 2009, in press.

191. A Retrosynthetic Sate-Transition Network N-linked Glycan Library for Profiling the Human Serum Glycome. Kronewitter, S., An, H.J., Leoz, M.L., Lebrilla, C.B., Proteomics, 2009, in press.

190. Profile of Native N-linked Glycan Structures from Human Serum Using High Performance Liquid Chromatography on a Microfluidic Chip and Time-of-Flight Mass Spectrometry. Chu, C.S., Ninonuevo, M.R., Clowers, B.H., Perkins, P., An, H.J., Yin, H., Killeen, K., Grimm, R., Lebrilla, C.B. Proteomics, 2009, 9(7), 1931-1951.

189. Detecting Cancer Glycan Biomarkers in Serum Samples using MALDI-FTICR Mass Spectrometry Data Barkauskas, D., An, H.J., Kronewitter, S., Leoz, M.L., Miyamoto, S., Leiserowitz, G. S., Lebrilla, C.B., Rocke, D.M. Bioinformatics, 2009, 25(2), 251-257.

188. The Prospects of Glycan Biomarkers for the Diagnosis of Diseases. Lebrilla, C.B. and An, H.J. Molecular Biosystems, 2009, 5(1), 17-20.

187. Bovine milk glycome. Tao, N.; DePeters, E. J.; Freeman, S.; German, J. B.; Grimm, R.; Lebrilla, C. B.. Journal of Dairy Science 2008, 91, 3768-3778.

186. Investigations with O-linked protein glycosylations by matrix-assisted laser desorption/ionization fourier transform ion cyclotron resonance mass spectrometry. Williams, Taufika Islam; Saggese, Diana A.; Toups, Kristina L.; Frahm, Jennifer L.; An, Hyun Joo; Li, Bensheng; Lebrilla, Carlito B.; Muddiman, David C.. Journal of Mass Spectrometry 2008, 43, 1215-1223.

185. Dual polarity accurate mass calibration for electrospray ionization and matrix-assisted laser desorption/ionization mass spectrometry using maltooligosaccharides. Clowers, Brian H.; Dodds, Eric D.; Seipert, Richard R.; Lebrilla, Carlito B.. Analytical Biochemistry 2008, 381, 205-213.

184. Wavelength and size dependence in single particle laser aerosol mass spectra. Wade, Elisabeth E.; Farquar, George R.; Steele, Paul T.; McJimpsey, Erica L.; Lebrilla, Carlito B.; Fergenson, David P. Journal of Aerosol Science 2008, 39, 657-666.

183. Size-dependent lipid content in human milk fat globules. Argov, Nurit; Wachsmann-Hogiu, Sebastian; Freeman, Samara L.; Huser, Thomas; Lebrilla, Carlito B.; German, J. Bruce. Journal of Agricultural and Food Chemistry 2008, 56, 7446-7450.

182. Glycoproteomic Analyses of Ovarian Cancer Cell Lines and Sera from Ovarian Cancer Patients Show Distinct Glycosylation Changes in Individual Proteins. Li, Bensheng; An, Hyun Joo; Kirmiz, Crystal; Lebrilla, Carlito B.; Lam, Kit S.; Miyamoto, Suzanne. Journal of Proteome Research 2008, 7, 3776-3788.

181. Factors That Influence Fragmentation Behavior of N-Linked Glycopeptide Ions. Seipert, Richard R.; Dodds, Eric D.; Clowers, Brian H.; Beecroft, Sean M.; German, J. Bruce; Lebrilla, Carlito B.. Analytical Chemistry 2008, 80, 3684-3692.

180. Parameters Contributing to Efficient Ion Generation in Aerosol MALDI Mass Spectrometry. McJimpsey, Erica L.; Jackson, William M.; Lebrilla, Carlito B.; Tobias, Herbert; Bogan, Michael J.; Gard, Eric E.; Frank, Matthias; Steele, Paul T.. Journal of the American Society for Mass Spectrometry 2008, 19, 315-324.

179. Effect of Changing Polymer Chain Length on the Target-Mediated Agglutination of Polymer-Grafted Nanoparticles. Costanzo, Philip J.; Dan, Nily; Lancaster, Katherine S.; Lebrilla, Carlito B.; Patten, Timothy E.. Macromolecules 2008, 41, 1570-1576.

178. Supramicrometer particle shadowgraph imaging in the ionization region of a single particle aerosol mass spectrometer. Farquar, George R.; Steele, Paul T.; McJimpsey, Erica L.; Lebrilla, Carlito B.; Tobias, Herbert J.; Gard, Eric E.; Frank, Matthias; Coffee, Keith; Riot, Vincent; Fergenson, David P. Journal of Aerosol Science 2008, 39, 10-18.

177. Daily variations in oligosaccharides of human milk determined by microfluidic chips and mass spectrometry. Ninonuevo, Milady R.; Perkins, Patrick D.; Francis, Jimi; Lamotte, LaTasha M.; LoCascio, Riccardo G.; Freeman, Samara L.; Mills, David A.; German, J. Bruce; Grimm, Rudolf; Lebrilla, Carlito B.. Journal of Agricultural and Food Chemistry 2008, 56, 618-626.

176. Analysis and Quantitation of Fructooligosaccharides Using Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Seipert, Richard R.; Barboza, Mariana; Ninonuevo, Milady R.; LoCascio, Riccardo G.; Mills, David A.; Freeman, Samara L.; German, J. Bruce; Lebrilla, Carlito B.. Analytical Chemistry 2008, 80, 159-165.

175. Systematic characterization of high mass accuracy influence on false discovery and probability scoring in peptide mass fingerprinting. Dodds, Eric D.; Clowers, Brian H.; Hagerman, Paul J.; Lebrilla, Carlito B.. Analytical Biochemistry 2008, 372, 156-166.

174. Glycomics analysis of serum: a potential new biomarker for ovarian cancer?. Leiserowitz G. S.; Lebrilla C.; Miyamoto S.; An H. J.; Duong H.; Kirmiz C.; Li B.; Liu H.; Lam K. S.. International journal of gynecological cancer : official journal of the international Gynecological Cancer Society 2008, 18, 470-475.

173. Frontiers in glycomics: bioinformatics and biomarkers in disease. An NIH white paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006). Packer, Nicolle H.; von der Lieth, Claus-Wilhelm; Aoki-Kinoshita, Kiyoko F.; Lebrilla, Carlito B.; Paulson, James C.; Raman, Rahul; Rudd, Pauline; Sasisekharan, Ram; Taniguchi, Naoyuki; York, WIlliam S.. Proteomics 2008, 8, 8-20.

172. Enabling MALDI-FTICR-MS/MS for High-Performance Proteomics through Combination of Infrared and Collisional Activation. Dodds, Eric D.; German, J. Bruce; Lebrilla, Carlito B.. Analytical Chemistry 2007, 79, 9547-9556.

171. Glycoprofiling of Bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation. LoCascio, Riccardo G.; Ninonuevo, Milady R.; Freeman, Samara L.; Sela, David A.; Grimm, Rudolf; Lebrilla, Carlito B.; Mills, David A.; German, J. Bruce. Journal of Agricultural and Food Chemistry 2007, 55, 8914-8919.

170. Method for Profiling Mucin Oligosaccharides from Gastric Biopsies of Rhesus Monkeys with and without Helicobacter pylori Infection. Cooke, Cara L.; An, Hyun Joo; Kim, Jaehan; Solnick, Jay V.; Lebrilla, Carlito B.. Analytical Chemistry 2007, 79, 8090-8097.

169. Site Determination of Protein Glycosylation Based on Digestion with Immobilized Nonspecific Proteases and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Clowers, Brian H.; Dodds, Eric D.; Seipert, Richard R.; Lebrilla, Carlito B.. Journal of Proteome Research 2007, 6, 4032-4040.

168. In vitro fermentability of human milk oligosaccharides by several strains of bifidobacteria. Ward, Robert E.; Ninonuevo, Milady; Mills, David A.; Lebrilla, Carlito B.; German, J. Bruce. Molecular Nutrition & Food Research 2007, 51, 1398-1405.

167. On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. Ye, Jingling; Liu, Hao; Lebrilla, Carilito B; Rocke, David M.. Department of Chemistry, University of California, Davis, CA, USA. BMC Bioinformatics 2007, 8:477.

166. A novel solution for glycoproteomics: rapid method for the determination of glycosylation site and oligosaccharide heterogeneity in glycoproteins. An, Hyun Joo; Dodds, Eric D.; Lebrilla, Carlito B.. Department of Chemistry, University of California, Davis, CA, USA. American Biotechnology Laboratory 2007, 25(6), 26, 28-29

165. A serum glycomics approach to breast cancer biomarkers. Kirmiz, Crystal; Li, Bensheng; An, Hyun Joo; Clowers, Brian H.; Chew, Helen K.; Lam, Kit S.; Ferrige, Anthony; Alecio, Robert; Borowsky, Alexander D.; Sulaimon, Shola; Lebrilla, Carlito B.; Miyamoto, Suzanne. Department of Chemistry, University of California, Davis, CA, USA. Molecular and Cellular Proteomics 2007, 6(1), 43-55.

164. Methods for the quantitation of human milk oligosaccharides in bacterial fermentation by mass spectrometry. Ninonuevo, Milady R.; Ward, Robert E.; LoCascio, Riccardo G.; German, J. Bruce; Freeman, Samara L.; Barboza, Mariana; Mills, David A.; Lebrilla, Carlito B.. Department of Chemistry and Biochemistry (School of Medicine), University of California, Davis, CA, USA. Analytical Biochemistry 2007, 361(1), 15-23.

163. Steady-State Asymmetric Nanospray Dual Ion Source for Accurate Mass Determination within a Chromatographic Separation. Young, Nicolas L.; Sisto, Michael C.; Young, Meggie N.; Grant, Patrick G.; Killilea, David W.; LaMotte, LaTasha; Wu, Kuang Jen J.; Lebrilla, Carlito B.. Biosecurity and NanoSciences Laboratory, Lawrence Livermore National Laboratory, Livermore, CA, USA. Analytical Chemistry (Washington, DC, United States) 2007, 79(15), 5711-5718.

162. A New Computer Program (GlycoX) To Determine Simultaneously the Glycosylation Sites and Oligosaccharide Heterogeneity of Glycoproteins. An, Hyun Joo; Tillinghast, John S.; Woodruff, David L.; Rocke, David M.; Lebrilla, Carlito B.. Department of Chemistry, Division of Biostatistics, Graduate School of Management, Biochemistry and Molecular Medicine, University of California, Davis, CA, USA. Journal of Proteome Research 2006, 5(10), 2800-2808.

161. A strategy for annotating the human milk glycome. Ninonuevo, Milady R.; Park, Youmie; Yin, Hongfeng; Zhang, Jinhua; Ward, Robert E.; Clowers, Brian H.; German, J. Bruce; Freeman, Samara L.; Killeen, Kevin; Grimm, Rudolf; Lebrilla, Carlito B.. Departments of Chemistry and Biochemistry (School of Medicine) and Food Science and Technology, University of California, Davis, CA, USA. Journal of Agricultural and Food Chemistry 2006, 54(20), 7471-7480.

160. Automatic Determination of O-Glycan Structure from Fragmentation Spectra. Goldberg, David; Bern, Marshall; Li, Bensheng; Lebrilla, Carlito B.. Palo Alto Research Center, Palo Alto, CA, USA. Journal of Proteome Research 2006, 5(6), 1429-1434

159. Bilateral, Difunctional Nanosphere Aggregates and Their Assembly Mediated by Polymer Chains. Barber, S. M.; Costanzo, P. J.; Moore, N. W.; Patten, T. E.; Lancaster, K. S.; Lebrilla, C. B.; Kuhl, T. L. Department of Chemistry and Department of Chemical Engineering and Materials Science, University of California-Davis, Davis, CA, USA. Journal of Physical Chemistry A 2006, 110(13), 4538-4542.

158. Characterization of Human Aspartoacylase: The Brain Enzyme Responsible for Canavan Disease. Le Coq, Johanne; An, Hyun-Joo; Lebrilla, Carlito; Viola, Ronald E. Department of Chemistry, University of Toledo, Toledo, OH, USA. Biochemistry 2006, 45(18), 5878-5884.

157. Enhanced Peptide Mass Fingerprinting through High Mass Accuracy: Exclusion of Non-Peptide Signals Based on Residual Mass. Dodds, Eric D.; An, Hyun Joo; Hagerman, Paul J.; Lebrilla, Carlito B.. Department of Chemistry and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California Davis, Davis, CA, USA. Journal of Proteome Research 2006, 5(5), 1195-1203

156. Fragmentation of Singly Protonated Peptides via a Combination of Infrared and Collisional Activation. Dodds, Eric D.; Hagerman, Paul J.; Lebrilla, Carlito B.. Department of Chemistry and School of Medicine, Department of Biochemistry and Molecular Medicine, University of California Davis, Davis, CA, USA. Analytical Chemistry 2006, 78(24), 8506-8511

155. In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri. Ward, Robert E.; Ninonuevo, Milady; Mills, David A.; Lebrilla, Carlito B.; German, J. Bruce. Department of Food Science and Technology, University of California, Davis, CA, USA. Applied and Environmental Microbiology 2006, 72(6), 4497-4499.

154. Interrogation of N-Linked Oligosaccharides Using Infrared Multiphoton Dissociation in FT-ICR Mass Spectrometry. Lancaster, Katherine S.; An, Hyun Joo; Li, Bensheng; Lebrilla, Carlito B.. Department of Chemistry, Department of Biochemistry-School of Medicine, University of California, Davis, CA, USA. Analytical Chemistry 2006, 78(14), 4990-4997.

153. Ion-molecule reactions and H/D exchange for structural characterization of biomolecules. Green, M. Kirk; Lebrilla, Carlito B.. McMaster Regional Centre for Mass Spectrometry, Department of Chemistry, McMaster University, Hamilton, Can. Editor(s): Laskin, Julia; Lifshitz, Chava. Principles of Mass Spectrometry Applied to Biomolecules 2006, 119-145

152. Method to Site-Specifically Identify and Quantitate Carbonyl End Products of Protein Oxidation Using Oxidation-Dependent Element Coded Affinity Tags (O-ECAT) and NanoLiquid Chromatography Fourier Transform Mass Spectrometry. Lee, Susan; Young, Nicolas L.; Whetstone, Paul A.; Cheal, Sarah M.; Benner, W. Henry; Lebrilla, Carlito B.; Meares, Claude F. Department of Chemistry, University of California-Davis, Davis, CA, USA. Journal of Proteome Research 2006, 5(3), 539-547.

151. Profiling of Glycans in Serum for the Discovery of Potential Biomarkers for Ovarian Cancer. An, Hyun Joo; Miyamoto, Suzanne; Lancaster, Katherine S.; Kirmiz, Crystal; Li, Bensheng; Lam, Kit S.; Leiserowitz, Gary S.; Lebrilla, Carlito B.. Department of Chemistry, Department of Internal Medicine, Division of Hematology Oncology, Davis Cancer Center, University of California Davis, Davis, CA, USA. Journal of Proteome Research 2006, 5(7), 1626-1635.